For A. logei, 19 contigs resulted, and the concatenated total length of the genome is 5,424,165. For V. gazogenes, 36 contigs resulted, and the concatenated total length of the genome is 6,306,541 bp. These assemblies took 36 hours (approximately 250 computer hours) per 10 million sequences. Contigs have been submitted to GenBank (numbers pending).

Annotations selleck chemical resulted in 5,575 coding sequences for S. costicola, 4,807 coding sequences for A. logei, and 5,616 coding sequences for V. gazogenes. The number of genes in all RAST subsystems as well as the number of tRNAs and coding sequences for all 35 species included in the 44–taxon dataset (a single strain was chosen for each species) are shown in Additional files 3: Table S3, Additional file 5: Table S4 and Additional file 6: Table S5. These www.selleckchem.com/products/Imatinib-Mesylate.html data are also shown graphically in Figure 7 with the subsystem abbreviations shown in the tables. Figure 7 RAST subsystems Circular Plot. From inner to outer: S. oneidensis, S. costicola, V. gazogenes, G. hollisae, P. damselae, P. profundum, P. angustum, P. sp. SKA34, A. logei, A.

salmonicida, A. fischeri ES114, V. nigripulchritudo, V. mediterranei, V. metschnikovii, V. anguillarum, V. furnissii, V. cholerae El Tor, V. mimicus M, V. sp. RC341, V. sp. RC586, V. sp. N418, V. ichthyoenteri, V. scophthalmi, V. sinaloensis, V. corallillyticus, V. brasiliensis, V. orientalis, V. tubiashii, V. splendidus,

V. vulnificus CMC, V. campbellii, V. sp. EJY3, V. parahaemolyticus, V. sp. Ex25, V. alginolyticus 12. Discussion The gene content variation based on RAST subsystems across the 35 total species included in this taxon sampling provides another way to compare genomes (Additional files 3: Table S3, Additional file 5: Table S4 and Additional file 6: Table S5; Figure 7). The total number of coding sequences ranges from 3,404 (V. metschnikovii) to 5,700 (V. nigripulchritudo). There is a large Molecular motor variation in the number of tRNAs, from 57 (V. sinaloensis) to 223 (P. damselae). The V. vulnificus and Photobacterium group, some members of the V. vulnificus group, plus G. hollisae and S. costicola have the most tRNAs. These are the clades that contain bioluminescent taxa and G. hollisae and S. costicola, because they are placed at the base of Photobacterium, might actually be members of Photobacterium. Future work could include looking at the genes of particular subsystems and their representative presence in different LCBs and looking at those genes that are not assignable to subsystems to find genes that might be unique to Vibrionaceae. Conclusions The placement of V. gazogenes, S. costicola, and G.