Clicking on the heat map opens a new window that shows the raw data generated by each tool of the considered feature box, thus allowing the investigator to access the tool-specific information they are used to. The predictions of related feature databases are given next to the corresponding heat-map. The proteins which are referred to by the databases implemented in CobaltDB as selleck kinase inhibitor having an experimentally determined localization appear with a yellow this website background colour. This representation enables the user to

observe graphically the distribution of tools predicting each type of feature. The “”meta-tools”" tab (Figure 4) provides the predictions given by multi-modular prediction Selleckchem AZD5363 software (meta-tools or global databases) that use various techniques to predict directly three to five subcellular protein localizations in mono- and/or diderm bacteria (Table 4). The descriptions of the localizations were standardised to ease interpretation by the investigator. Both tables may be searched for occurrences of any string of characters via the search button, facilitating retrieval of a particular locus tag, protein id, accession number or even a gene name or

annotation description. Both tables may be sorted with respect to any column, i.e. in alphanumerical order for the locus tags, protein identifiers, annotation descriptions and localization predictions, or in numerical order for the percentages. This makes it straightforward to identify all proteins with particular combinations of localization features. Both tables may be saved as Excel files. Finally, the CoBaltDB “”additional tools”" tab (Figure 5) enables queries to be submitted to a set of 50 additional tools by pre-filling the selected forms with the selected protein sequence and Gram information whenever appropriate.

For this use, the investigator might have to enter additional parameters. Figure 2 A snapshot of the CoBaltDB input interface. The “”input”" module allows the selection of organisms, using organism name completion or through an alphabetical list. Users can also enter a subset of proteins, specified selleck chemicals by their locus tags. Figure 3 The CoBaltDB Specialized Tools viewer. The “”Specialized tools”" browser supplies a tabular output for every protein, enriched with the protein’s annotation including locus tag, protein identifier, gene name (if available) and product descriptions. Clicking on each “”locus tag”" opens a navigator window with related KEGG link whereas clicking on every “”protein Id”" opens the corresponding NCBI entry web page. Clicking on the white/blue heat map reveals the raw results of all tools corresponding to the feature box considered. Figure 4 The CoBaltDB Meta-Tools interface.